A few points.
I'm virtually certain that the car controls the charge rate, not the Supercharger. I'll eat my hat and yours if I'm wrong. So any car can request whatever power level it wants, up to the max. Not sure if this is proven, but it makes so much more sense, and if not--what's the difference? The point is, the car that's charging (it won't always be a Model S in the future) must communicate with the station. The charger must somehow determine how much power to put out...the source of that information is the car.
About charger use:
On the one hand, unless the pack is REALLY big (in which the max power output of the Supercharger is far less than the pack can handle), battery size doesn't matter. Whether a pack is huge or small, charging at, say 1C takes the same time for both packs. And EV charge rate is capped by the C rate, because that's what impacts battery life.
On the other hand, markwj is correct in that, in general, smaller packs tend to have lower mph charge rates. Yes, smaller packs usually come on smaller cars, so their Wh/mi is typically less, but not enough to make up for the lower capacity of the pack. So, smaller packs would mean lower capacity charging not longer at a time, but more frequently.
I think, however, that any EV participating in this would probably have a range of ~100 or more miles. I think the increased demand for chargers if you add a lot of 100 mi range EVs into the mix would be properly balanced by an increased number of supercharger stations.