When you say the fobs weren't working, does that mean you double clicked on the top of the fob to unlock the car as well? I had a problem where the handles wouldn't extend automatically or by touching them but it would unlock by physically pressing the unlock button twice. If this is the same thing that happened to you, then there's a song and dance to do to fix it that involves a reset, another step, another reset, and then another step.
Nothing was working on the fobs. They are working great now though