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Do you think the $2500 is worth the the cost for the stereo upgrade on the P85D?
Sometimes software updates have been known to "zero" out the EQ settings, but even with that being the case I would assume your UHF system should sound better than standard, based on the subwoofer. I've also never had very much luck finding good settings with Dolby on, so I leave it off.
Note that until one of the latest 6.2 release, Dolby On produced some bad results for people and most had Dolby Off. Now, this was greatly improved and Dolby On is a significant improvement from before. The same release changing this also greatly improved the standard audio. It is likely DPD either has the older firmware, or Dolby Off.
In my opinion, the MS is weird for how much it can swing from really anemic in the bass, to rather full, depending upon source material.