Honda ditched ultra cap; the new FCX uses lithium-ion.
Also, the reason given in the forum post about the Prius having ultacaps is that they needed a battery that could be charged very quickly.
The Prius has a relatively small battery pack along with the fact that NiMH can't handle high charge/discharge rates. I'd imagine it is because of these two reasons that the Prius needs ultracaps.
However, the Roadster's battery pack is relatively enormous and lithium handles high charge/discharge rates better than NiMH. For these reasons, the Roadster doesn't need ultracaps.
I've driven an ACP Ebox - it also has a battery pack of thousands of laptop cells like in the Roadster and, as far as I know, no ultracaps - and it has VERY strong regen. It'll bring the car to a stop very quickly at low speeds. You really don't want anymore regen that this car gives. However, this is only at lower speeds.
Ultracapitors probably would extend that strong regen capability to higher speeds. But the problem is that at high speeds you don't need to brake much because you're usually on the highway when you're at high speeds. And since you don't brake much on the highway, there's little opportunity to regen, which means the ultracapitors wouldn't need to be used very often.
The only possible benefit I see with ultracaps would be to assist in acceleration, possibly reducing battery abuse and extending battery life. But I don't think the extra volume, weight, and cost are worth it since most EVs probably aren't going to be driven that hard.